71 lines
1.1 KiB
Nix
71 lines
1.1 KiB
Nix
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{
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lib,
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stdenv,
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fetchFromGitHub,
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autoreconfHook,
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htslib,
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zlib,
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bzip2,
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xz,
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curl,
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perl,
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python3,
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bash,
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}:
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stdenv.mkDerivation (finalAttrs: {
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pname = "bcftools";
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version = "1.22";
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src = fetchFromGitHub {
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owner = "samtools";
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repo = "bcftools";
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tag = finalAttrs.version;
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hash = "sha256-S+FuqjiOf38sAQKWYOixv/MlXGnuDmkx9z4Co/pk/eM=";
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};
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nativeBuildInputs = [
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autoreconfHook
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perl
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python3
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];
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buildInputs = [
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htslib
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zlib
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bzip2
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xz
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curl
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];
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nativeCheckInputs = [
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htslib
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];
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strictDeps = true;
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makeFlags = [
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"HSTDIR=${htslib}"
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"prefix=$(out)"
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"CC=${stdenv.cc.targetPrefix}cc"
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];
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preCheck = ''
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patchShebangs misc/
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patchShebangs test/
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sed -i -e 's|/bin/bash|${bash}/bin/bash|' test/test.pl
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'';
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enableParallelBuilding = true;
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doCheck = true;
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meta = with lib; {
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description = "Tools for manipulating BCF2/VCF/gVCF format, SNP and short indel sequence variants";
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license = licenses.mit;
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homepage = "http://www.htslib.org/";
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platforms = platforms.unix;
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maintainers = [ maintainers.mimame ];
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};
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})
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