43 lines
1.7 KiB
Diff
43 lines
1.7 KiB
Diff
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diff --git a/Makefile b/Makefile
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index 359585f..13ec279 100644
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--- a/Makefile
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+++ b/Makefile
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@@ -49,7 +49,6 @@ OBJS= src/fastmap.o src/bwtindex.o src/utils.o src/memcpy_bwamem.o src/kthread.
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src/FMI_search.o src/read_index_ele.o src/bwamem_pair.o src/kswv.o src/bwa.o \
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src/bwamem_extra.o src/kopen.o
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BWA_LIB= libbwa.a
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-SAFE_STR_LIB= ext/safestringlib/libsafestring.a
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ifeq ($(arch),sse41)
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ifeq ($(CXX), icpc)
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@@ -101,16 +100,6 @@ CXXFLAGS+= -g -O3 -fpermissive $(ARCH_FLAGS) #-Wall ##-xSSE2
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all:$(EXE)
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multi:
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- rm -f src/*.o $(BWA_LIB); cd ext/safestringlib/ && $(MAKE) clean;
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- $(MAKE) arch=sse41 EXE=bwa-mem2.sse41 CXX=$(CXX) all
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- rm -f src/*.o $(BWA_LIB); cd ext/safestringlib/ && $(MAKE) clean;
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- $(MAKE) arch=sse42 EXE=bwa-mem2.sse42 CXX=$(CXX) all
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- rm -f src/*.o $(BWA_LIB); cd ext/safestringlib/ && $(MAKE) clean;
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- $(MAKE) arch=avx EXE=bwa-mem2.avx CXX=$(CXX) all
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- rm -f src/*.o $(BWA_LIB); cd ext/safestringlib/ && $(MAKE) clean;
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- $(MAKE) arch=avx2 EXE=bwa-mem2.avx2 CXX=$(CXX) all
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- rm -f src/*.o $(BWA_LIB); cd ext/safestringlib/ && $(MAKE) clean;
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- $(MAKE) arch=avx512 EXE=bwa-mem2.avx512bw CXX=$(CXX) all
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$(CXX) -Wall -O3 src/runsimd.cpp -Iext/safestringlib/include -Lext/safestringlib/ -lsafestring $(STATIC_GCC) -o bwa-mem2
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@@ -120,12 +109,8 @@ $(EXE):$(BWA_LIB) $(SAFE_STR_LIB) src/main.o
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$(BWA_LIB):$(OBJS)
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ar rcs $(BWA_LIB) $(OBJS)
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-$(SAFE_STR_LIB):
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- cd ext/safestringlib/ && $(MAKE) clean && $(MAKE) CC=$(CC) directories libsafestring.a
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-
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clean:
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rm -fr src/*.o $(BWA_LIB) $(EXE) bwa-mem2.sse41 bwa-mem2.sse42 bwa-mem2.avx bwa-mem2.avx2 bwa-mem2.avx512bw
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- cd ext/safestringlib/ && $(MAKE) clean
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depend:
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(LC_ALL=C; export LC_ALL; makedepend -Y -- $(CXXFLAGS) $(CPPFLAGS) -I. -- src/*.cpp)
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