36 lines
938 B
Nix
36 lines
938 B
Nix
|
{
|
||
|
|
python3,
|
||
|
|
lib,
|
||
|
|
fetchFromGitHub,
|
||
|
|
}:
|
||
|
|
|
||
|
|
python3.pkgs.buildPythonApplication rec {
|
||
|
|
pname = "xenomapper";
|
||
|
|
version = "1.0.2";
|
||
|
|
pyproject = true;
|
||
|
|
|
||
|
|
src = fetchFromGitHub {
|
||
|
|
owner = "genomematt";
|
||
|
|
repo = "xenomapper";
|
||
|
|
rev = "v${version}";
|
||
|
|
sha256 = "0mnmfzlq5mhih6z8dq5bkx95vb8whjycz9mdlqwbmlqjb3gb3zhr";
|
||
|
|
};
|
||
|
|
|
||
|
|
build-system = with python3.pkgs; [ setuptools ];
|
||
|
|
|
||
|
|
dependencies = with python3.pkgs; [ statistics ];
|
||
|
|
|
||
|
|
pythonImportsCheck = [
|
||
|
|
"xenomapper.xenomapper"
|
||
|
|
"xenomapper.mappability"
|
||
|
|
];
|
||
|
|
|
||
|
|
meta = with lib; {
|
||
|
|
homepage = "https://github.com/genomematt/xenomapper";
|
||
|
|
description = "Utility for post processing mapped reads that have been aligned to a primary genome and a secondary genome and binning reads into species specific, multimapping in each species, unmapped and unassigned bins";
|
||
|
|
license = licenses.gpl3;
|
||
|
|
platforms = platforms.all;
|
||
|
|
maintainers = [ maintainers.jbedo ];
|
||
|
|
};
|
||
|
|
}
|