push sheeet

pkgs/applications/science/misc/convertall/default.nix

@@ -0,0 +1,28 @@
+{
+  lib,
+  flutter329,
+  fetchFromGitHub,
+}:
+
+flutter329.buildFlutterApplication rec {
+  pname = "convertall";
+  version = "1.0.2";
+
+  src = fetchFromGitHub {
+    owner = "doug-101";
+    repo = "ConvertAll";
+    tag = "v${version}";
+    hash = "sha256-esc2xhL0Jx5SaqM0GnnVzdtnSN9bX8zln66We/2RqoA=";
+  };
+
+  pubspecLock = lib.importJSON ./pubspec.lock.json;
+
+  meta = {
+    homepage = "https://convertall.bellz.org";
+    description = "Graphical unit converter";
+    mainProgram = "convertall";
+    license = lib.licenses.gpl2Plus;
+    maintainers = with lib.maintainers; [ orivej ];
+    platforms = lib.platforms.linux;
+  };
+}

pkgs/applications/science/misc/convertall/pubspec.lock.json

@@ -0,0 +1,792 @@
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+    },
+    "stack_trace": {
+      "dependency": "transitive",
+      "description": {
+        "name": "stack_trace",
+        "sha256": "8b27215b45d22309b5cddda1aa2b19bdfec9df0e765f2de506401c071d38d1b1",
+        "url": "https://pub.dev"
+      },
+      "source": "hosted",
+      "version": "1.12.1"
+    },
+    "stream_channel": {
+      "dependency": "transitive",
+      "description": {
+        "name": "stream_channel",
+        "sha256": "969e04c80b8bcdf826f8f16579c7b14d780458bd97f56d107d3950fdbeef059d",
+        "url": "https://pub.dev"
+      },
+      "source": "hosted",
+      "version": "2.1.4"
+    },
+    "string_scanner": {
+      "dependency": "transitive",
+      "description": {
+        "name": "string_scanner",
+        "sha256": "921cd31725b72fe181906c6a94d987c78e3b98c2e205b397ea399d4054872b43",
+        "url": "https://pub.dev"
+      },
+      "source": "hosted",
+      "version": "1.4.1"
+    },
+    "term_glyph": {
+      "dependency": "transitive",
+      "description": {
+        "name": "term_glyph",
+        "sha256": "7f554798625ea768a7518313e58f83891c7f5024f88e46e7182a4558850a4b8e",
+        "url": "https://pub.dev"
+      },
+      "source": "hosted",
+      "version": "1.2.2"
+    },
+    "test_api": {
+      "dependency": "transitive",
+      "description": {
+        "name": "test_api",
+        "sha256": "fb31f383e2ee25fbbfe06b40fe21e1e458d14080e3c67e7ba0acfde4df4e0bbd",
+        "url": "https://pub.dev"
+      },
+      "source": "hosted",
+      "version": "0.7.4"
+    },
+    "typed_data": {
+      "dependency": "transitive",
+      "description": {
+        "name": "typed_data",
+        "sha256": "f9049c039ebfeb4cf7a7104a675823cd72dba8297f264b6637062516699fa006",
+        "url": "https://pub.dev"
+      },
+      "source": "hosted",
+      "version": "1.4.0"
+    },
+    "url_launcher": {
+      "dependency": "direct main",
+      "description": {
+        "name": "url_launcher",
+        "sha256": "9d06212b1362abc2f0f0d78e6f09f726608c74e3b9462e8368bb03314aa8d603",
+        "url": "https://pub.dev"
+      },
+      "source": "hosted",
+      "version": "6.3.1"
+    },
+    "url_launcher_android": {
+      "dependency": "transitive",
+      "description": {
+        "name": "url_launcher_android",
+        "sha256": "8582d7f6fe14d2652b4c45c9b6c14c0b678c2af2d083a11b604caeba51930d79",
+        "url": "https://pub.dev"
+      },
+      "source": "hosted",
+      "version": "6.3.16"
+    },
+    "url_launcher_ios": {
+      "dependency": "transitive",
+      "description": {
+        "name": "url_launcher_ios",
+        "sha256": "7f2022359d4c099eea7df3fdf739f7d3d3b9faf3166fb1dd390775176e0b76cb",
+        "url": "https://pub.dev"
+      },
+      "source": "hosted",
+      "version": "6.3.3"
+    },
+    "url_launcher_linux": {
+      "dependency": "transitive",
+      "description": {
+        "name": "url_launcher_linux",
+        "sha256": "4e9ba368772369e3e08f231d2301b4ef72b9ff87c31192ef471b380ef29a4935",
+        "url": "https://pub.dev"
+      },
+      "source": "hosted",
+      "version": "3.2.1"
+    },
+    "url_launcher_macos": {
+      "dependency": "transitive",
+      "description": {
+        "name": "url_launcher_macos",
+        "sha256": "17ba2000b847f334f16626a574c702b196723af2a289e7a93ffcb79acff855c2",
+        "url": "https://pub.dev"
+      },
+      "source": "hosted",
+      "version": "3.2.2"
+    },
+    "url_launcher_platform_interface": {
+      "dependency": "transitive",
+      "description": {
+        "name": "url_launcher_platform_interface",
+        "sha256": "552f8a1e663569be95a8190206a38187b531910283c3e982193e4f2733f01029",
+        "url": "https://pub.dev"
+      },
+      "source": "hosted",
+      "version": "2.3.2"
+    },
+    "url_launcher_web": {
+      "dependency": "transitive",
+      "description": {
+        "name": "url_launcher_web",
+        "sha256": "3ba963161bd0fe395917ba881d320b9c4f6dd3c4a233da62ab18a5025c85f1e9",
+        "url": "https://pub.dev"
+      },
+      "source": "hosted",
+      "version": "2.4.0"
+    },
+    "url_launcher_windows": {
+      "dependency": "transitive",
+      "description": {
+        "name": "url_launcher_windows",
+        "sha256": "3284b6d2ac454cf34f114e1d3319866fdd1e19cdc329999057e44ffe936cfa77",
+        "url": "https://pub.dev"
+      },
+      "source": "hosted",
+      "version": "3.1.4"
+    },
+    "vector_math": {
+      "dependency": "transitive",
+      "description": {
+        "name": "vector_math",
+        "sha256": "80b3257d1492ce4d091729e3a67a60407d227c27241d6927be0130c98e741803",
+        "url": "https://pub.dev"
+      },
+      "source": "hosted",
+      "version": "2.1.4"
+    },
+    "vm_service": {
+      "dependency": "transitive",
+      "description": {
+        "name": "vm_service",
+        "sha256": "0968250880a6c5fe7edc067ed0a13d4bae1577fe2771dcf3010d52c4a9d3ca14",
+        "url": "https://pub.dev"
+      },
+      "source": "hosted",
+      "version": "14.3.1"
+    },
+    "web": {
+      "dependency": "transitive",
+      "description": {
+        "name": "web",
+        "sha256": "97da13628db363c635202ad97068d47c5b8aa555808e7a9411963c533b449b27",
+        "url": "https://pub.dev"
+      },
+      "source": "hosted",
+      "version": "0.5.1"
+    },
+    "win32": {
+      "dependency": "transitive",
+      "description": {
+        "name": "win32",
+        "sha256": "dc6ecaa00a7c708e5b4d10ee7bec8c270e9276dfcab1783f57e9962d7884305f",
+        "url": "https://pub.dev"
+      },
+      "source": "hosted",
+      "version": "5.12.0"
+    },
+    "window_manager": {
+      "dependency": "direct main",
+      "description": {
+        "name": "window_manager",
+        "sha256": "8699323b30da4cdbe2aa2e7c9de567a6abd8a97d9a5c850a3c86dcd0b34bbfbf",
+        "url": "https://pub.dev"
+      },
+      "source": "hosted",
+      "version": "0.3.9"
+    },
+    "xdg_directories": {
+      "dependency": "transitive",
+      "description": {
+        "name": "xdg_directories",
+        "sha256": "7a3f37b05d989967cdddcbb571f1ea834867ae2faa29725fd085180e0883aa15",
+        "url": "https://pub.dev"
+      },
+      "source": "hosted",
+      "version": "1.1.0"
+    },
+    "xml": {
+      "dependency": "transitive",
+      "description": {
+        "name": "xml",
+        "sha256": "b015a8ad1c488f66851d762d3090a21c600e479dc75e68328c52774040cf9226",
+        "url": "https://pub.dev"
+      },
+      "source": "hosted",
+      "version": "6.5.0"
+    },
+    "yaml": {
+      "dependency": "transitive",
+      "description": {
+        "name": "yaml",
+        "sha256": "b9da305ac7c39faa3f030eccd175340f968459dae4af175130b3fc47e40d76ce",
+        "url": "https://pub.dev"
+      },
+      "source": "hosted",
+      "version": "3.1.3"
+    }
+  },
+  "sdks": {
+    "dart": ">=3.7.0 <4.0.0",
+    "flutter": ">=3.27.0"
+  }
+}

pkgs/applications/science/misc/gplates/default.nix

@@ -0,0 +1,89 @@
+{
+  lib,
+  stdenv,
+  fetchFromGitHub,
+  fetchpatch,
+  cmake,
+  doxygen,
+  graphviz,
+  boost,
+  cgal,
+  gdal,
+  glew,
+  gmp,
+  libGL,
+  libGLU,
+  libSM,
+  mpfr,
+  proj,
+  python3,
+  qtxmlpatterns,
+  qwt,
+  wrapQtAppsHook,
+}:
+
+let
+  python = python3.withPackages (
+    ps: with ps; [
+      numpy
+    ]
+  );
+  boost' = boost.override {
+    enablePython = true;
+    inherit python;
+  };
+  cgal' = cgal.override {
+    boost = boost';
+  };
+in
+stdenv.mkDerivation (finalAttrs: {
+  pname = "gplates";
+  version = "2.5";
+
+  src = fetchFromGitHub {
+    owner = "GPlates";
+    repo = "GPlates";
+    rev = "GPlates-${finalAttrs.version}";
+    hash = "sha256-3fEwm5EKK9RcRbnyUejgwfjdsXaujjZjoMbq/BbVMeM=";
+  };
+
+  patches = [
+    (fetchpatch {
+      name = "qwt-6.3-compile-error-fix.patch";
+      url = "https://github.com/GPlates/GPlates/commit/c4680ebe54f4535909085feacecd66410a91ff98.patch";
+      hash = "sha256-mw5+GLayMrmcSDd1ai+0JTuY3iedHT9u2kx5Dd2wMjg=";
+    })
+  ];
+
+  nativeBuildInputs = [
+    cmake
+    doxygen
+    graphviz
+    wrapQtAppsHook
+  ];
+
+  buildInputs = [
+    boost'
+    cgal'
+    gdal
+    glew
+    gmp
+    libGL
+    libGLU
+    libSM
+    mpfr
+    proj
+    python
+    qtxmlpatterns
+    qwt
+  ];
+
+  meta = with lib; {
+    description = "Desktop software for the interactive visualisation of plate-tectonics";
+    mainProgram = "gplates";
+    homepage = "https://www.gplates.org";
+    license = licenses.gpl2Only;
+    platforms = platforms.all;
+    broken = stdenv.hostPlatform.isDarwin; # FIX: this check: https://github.com/GPlates/GPlates/blob/gplates/cmake/modules/Config_h.cmake#L72
+  };
+})

pkgs/applications/science/misc/graphia/default.nix

@@ -0,0 +1,49 @@
+{
+  stdenv,
+  lib,
+  cmake,
+  git,
+  fetchFromGitHub,
+  wrapQtAppsHook,
+  qtbase,
+  qtdeclarative,
+  qtsvg,
+  qtwebengine,
+}:
+
+stdenv.mkDerivation rec {
+  pname = "graphia";
+  version = "5.2";
+
+  src = fetchFromGitHub {
+    owner = "graphia-app";
+    repo = "graphia";
+    rev = version;
+    sha256 = "sha256-tS5oqpwpqvWGu67s8OuA4uQR3Zb5VzHTY/GnfVQki6k=";
+  };
+
+  nativeBuildInputs = [
+    cmake
+    git # needs to define some hash as a version
+    wrapQtAppsHook
+  ];
+
+  buildInputs = [
+    qtbase
+    qtdeclarative
+    qtsvg
+    qtwebengine
+  ];
+
+  meta = with lib; {
+    # never built on Hydra https://hydra.nixos.org/job/nixpkgs/trunk/graphia.x86_64-darwin
+    broken =
+      (stdenv.hostPlatform.isLinux && stdenv.hostPlatform.isAarch64) || stdenv.hostPlatform.isDarwin;
+    description = "Visualisation tool for the creation and analysis of graphs";
+    homepage = "https://graphia.app";
+    license = licenses.gpl3Only;
+    mainProgram = "Graphia";
+    maintainers = [ maintainers.bgamari ];
+    platforms = platforms.all;
+  };
+}

pkgs/applications/science/misc/megam/default.nix

@@ -0,0 +1,69 @@
+{
+  lib,
+  stdenv,
+  fetchurl,
+  ocaml,
+  ncurses,
+}:
+
+stdenv.mkDerivation {
+  pname = "megam";
+  version = "0.92";
+
+  src = fetchurl {
+    url = "http://hal3.name/megam/megam_src.tgz";
+    sha256 = "dc0e9f59ff8513449fe3bd40b260141f89c88a4edf6ddc8b8a394c758e49724e";
+  };
+
+  patches = [
+    ./ocaml-includes.patch
+    ./ocaml-3.12.patch
+  ];
+
+  postPatch = ''
+    # Deprecated in ocaml 3.10 https://github.com/ocaml/ocaml/commit/f6190f3d0c49c5220d443ee8d03ca5072d68aa87
+    # Deprecated in ocaml 3.08 https://github.com/ocaml/ocaml/commit/0c7aecb88dc696f66f49f3bed54a037361a26b8d
+    substituteInPlace fastdot_c.c --replace copy_double caml_copy_double --replace Bigarray_val Caml_ba_array_val --replace caml_bigarray caml_ba_array
+    # They were already deprecated in 3.12 https://v2.ocaml.org/releases/3.12/htmlman/libref/Array.html
+    substituteInPlace abffs.ml main.ml --replace create_matrix make_matrix
+    substituteInPlace intHashtbl.ml --replace Array.create Array.make
+  '';
+  strictDeps = true;
+
+  nativeBuildInputs = [ ocaml ];
+
+  buildInputs = [ ncurses ];
+
+  makeFlags = [
+    "CAML_INCLUDES=${ocaml}/lib/ocaml/caml"
+    ("WITHBIGARRAY=" + lib.optionalString (lib.versionOlder ocaml.version "4.08.0") "bigarray.cma")
+    "all"
+    "opt"
+  ];
+
+  # see https://bugzilla.redhat.com/show_bug.cgi?id=435559
+  dontStrip = true;
+
+  installPhase = ''
+    runHook preInstall
+
+    install -Dm755 megam $out/bin/megam
+    install -Dm755 megam.opt $out/bin/megam.opt
+
+    runHook postInstall
+  '';
+
+  meta = with lib; {
+    description = "MEGA Model Optimization Package";
+    longDescription = ''
+      The software here is an implementation of maximum likelihood and maximum a
+      posterior optimization of the parameters of these models. The algorithms
+      used are much more efficient than the iterative scaling techniques used in
+      almost every other maxent package out there.
+    '';
+    homepage = "http://www.umiacs.umd.edu/~hal/megam";
+    license = lib.licenses.unfree;
+    maintainers = with maintainers; [ leixb ];
+    platforms = platforms.unix;
+  };
+}

pkgs/applications/science/misc/megam/ocaml-3.12.patch

@@ -0,0 +1,12 @@
+diff -ru megam_0.92/Makefile megam_0.92-b/Makefile
+--- megam_0.92/Makefile	2007-10-08 18:06:04.000000000 +0100
++++ megam_0.92-b/Makefile	2013-11-25 10:14:20.000000000 +0000
+@@ -59,7 +59,7 @@
+ 
+ WITHUNIX =unix.cma -cclib -lunix
+ 
+-WITHSTR =str.cma -cclib -lstr
++WITHSTR =str.cma -cclib -lcamlstr
+ 
+ WITHBIGARRAY =bigarray.cma -cclib -lbigarray
+ 

pkgs/applications/science/misc/megam/ocaml-includes.patch

@@ -0,0 +1,21 @@
+diff -ru megam_0.92/Makefile megam_0.92-b/Makefile
+--- megam_0.92/Makefile	2007-10-08 18:06:04.000000000 +0100
++++ megam_0.92-b/Makefile	2013-11-25 10:14:20.000000000 +0000
+@@ -41,7 +41,7 @@
+ #
+ # The Caml compilers. #
+ # You may fix here the path to access the Caml compiler on your machine
+-CAMLC = ocamlc -g
++CAMLC = ocamlc -g $(WITHCLIBS)
+ CAMLOPT = ocamlopt -unsafe -ccopt -O4 -ccopt -ffast-math -inline 99999 
+ CAMLDEP = ocamldep
+ CAMLLEX = ocamllex
+@@ -70,7 +70,7 @@
+ WITHDBM =dbm.cma -cclib -lmldbm -cclib -lndbm
+ 
+ #WITHCLIBS =-I /usr/lib/ocaml/3.09.2/caml
+-WITHCLIBS =-I /usr/lib/ocaml/caml
++WITHCLIBS =-I $(CAML_INCLUDES) -I +unix -I +str
+ 
+ ################ End of user's variables #####################
+ 

pkgs/applications/science/misc/openmodelica/combined/default.nix

@@ -0,0 +1,52 @@
+{
+  stdenv,
+  lib,
+  openmodelica,
+  symlinkJoin,
+  gnumake,
+  blas,
+  lapack,
+  makeWrapper,
+}:
+symlinkJoin {
+  name = "openmodelica-combined";
+  paths = with openmodelica; [
+    omcompiler
+    omsimulator
+    omplot
+    omparser
+    omedit
+    omlibrary
+    omshell
+  ];
+
+  nativeBuildInputs = [ makeWrapper ];
+
+  postBuild = ''
+    wrapProgram $out/bin/OMEdit \
+      --prefix PATH : ${
+        lib.makeBinPath [
+          gnumake
+          stdenv.cc
+        ]
+      } \
+      --prefix LIBRARY_PATH : "${
+        lib.makeLibraryPath [
+          blas
+          lapack
+        ]
+      }" \
+      --set-default OPENMODELICALIBRARY "${openmodelica.omlibrary}/lib/omlibrary"
+  '';
+
+  meta = with lib; {
+    description = "Open-source Modelica-based modeling and simulation environment intended for industrial and academic usage";
+    homepage = "https://openmodelica.org";
+    license = licenses.gpl3Only;
+    maintainers = with maintainers; [
+      balodja
+      smironov
+    ];
+    platforms = platforms.linux;
+  };
+}

pkgs/applications/science/misc/openmodelica/default.nix

@@ -0,0 +1,24 @@
+{
+  lib,
+  newScope,
+  libsForQt5,
+  clangStdenv,
+}:
+lib.makeScope newScope (
+  self:
+  let
+    callPackage = self.newScope { stdenv = clangStdenv; };
+    callQtPackage = self.newScope (libsForQt5 // { stdenv = clangStdenv; });
+  in
+  {
+    mkOpenModelicaDerivation = callPackage ./mkderivation { };
+    omcompiler = callPackage ./omcompiler { };
+    omplot = callQtPackage ./omplot { };
+    omsimulator = callPackage ./omsimulator { };
+    omparser = callPackage ./omparser { };
+    omedit = callQtPackage ./omedit { };
+    omlibrary = callPackage ./omlibrary { };
+    omshell = callQtPackage ./omshell { };
+    combined = callPackage ./combined { };
+  }
+)

pkgs/applications/science/misc/openmodelica/mkderivation/default.nix

@@ -0,0 +1,132 @@
+# mkOpenModelicaDerivation is an mkDerivation function for packages
+# from OpenModelica suite.
+
+{
+  stdenv,
+  lib,
+  fetchgit,
+  autoconf,
+  automake,
+  libtool,
+  cmake,
+  autoreconfHook,
+  symlinkJoin,
+}:
+pkg:
+let
+  inherit (builtins)
+    hasAttr
+    getAttr
+    length
+    elemAt
+    ;
+  inherit (lib) attrByPath concatStringsSep;
+
+  # A few helpers functions:
+
+  # getAttrDef is just a getAttr with default fallback
+  getAttrDef =
+    attr: default: x:
+    attrByPath [ attr ] default x;
+
+  # getAttr-like helper for optional append to string:
+  # "Hello" + appendByAttr "a" " " {a = "world";} = "Hello world"
+  # "Hello" + appendByAttr "a" " " {} = "Hello"
+  appendByAttr =
+    attr: sep: x:
+    lib.optionalString (hasAttr attr x) (sep + (getAttr attr x));
+
+  # Are there any OM dependencies at all?
+  ifDeps = length pkg.omdeps != 0;
+
+  # Dependencies of current OpenModelica-target joined in one file tree.
+  # Return the dep itself in case it is a single one.
+  joinedDeps =
+    if length pkg.omdeps == 1 then
+      elemAt pkg.omdeps 0
+    else
+      symlinkJoin {
+        name = pkg.pname + "-omhome";
+        paths = pkg.omdeps;
+      };
+
+  # Should we run ./configure for the target pkg?
+  omautoconf = getAttrDef "omautoconf" false pkg;
+
+  # Name of the make target
+  omtarget = getAttrDef "omtarget" pkg.pname pkg;
+
+  # Directory of target sources
+  omdir = getAttrDef "omdir" pkg.pname pkg;
+
+  # Simple to to m4 configuration scripts
+  postPatch =
+    lib.optionalString ifDeps ''
+      sed -i ''$(find -name omhome.m4) -e 's|if test ! -z "$USINGPRESETBUILDDIR"|if test ! -z "$USINGPRESETBUILDDIR" -a -z "$OMHOME"|'
+    ''
+    + appendByAttr "postPatch" "\n" pkg;
+
+  # Update shebangs in the scripts before running configuration.
+  preAutoreconf = "patchShebangs --build common" + appendByAttr "preAutoreconf" "\n" pkg;
+
+  # Tell OpenModelica where built dependencies are located.
+  configureFlags =
+    lib.optional ifDeps "--with-openmodelicahome=${joinedDeps}" ++ getAttrDef "configureFlags" [ ] pkg;
+
+  # Our own configurePhase that accounts for omautoconf
+  configurePhase = ''
+    runHook preConfigure
+    export configureFlags="''${configureFlags} --with-ombuilddir=$PWD/build --prefix=$prefix"
+    ./configure --no-recursion $configureFlags
+    ${lib.optionalString omautoconf "(cd ${omdir}; ./configure $configureFlags)"}
+    runHook postConfigure
+  '';
+
+  # Targets that we want to build ourselves:
+  deptargets = lib.forEach pkg.omdeps (dep: dep.omtarget);
+
+  # ... so we ask openmodelica makefile to skip those targets.
+  preBuild = ''
+    for target in ${concatStringsSep " " deptargets}; do
+      touch ''${target}.skip;
+    done
+  ''
+  + appendByAttr "preBuild" "\n" pkg;
+
+  makeFlags = "${omtarget}" + appendByAttr "makeFlags" " " pkg;
+
+  installFlags = "-i " + appendByAttr "installFlags" " " pkg;
+
+in
+stdenv.mkDerivation (
+  pkg
+  // {
+    inherit
+      omtarget
+      postPatch
+      preAutoreconf
+      configureFlags
+      configurePhase
+      preBuild
+      makeFlags
+      installFlags
+      ;
+
+    src = fetchgit (import ./src-main.nix);
+    version = "1.18.0";
+
+    nativeBuildInputs = getAttrDef "nativeBuildInputs" [ ] pkg ++ [
+      autoconf
+      automake
+      libtool
+      cmake
+      autoreconfHook
+    ];
+
+    buildInputs = getAttrDef "buildInputs" [ ] pkg ++ lib.optional ifDeps joinedDeps;
+
+    dontUseCmakeConfigure = true;
+
+    hardeningDisable = [ "format" ];
+  }
+)

pkgs/applications/science/misc/openmodelica/mkderivation/src-main.nix

@@ -0,0 +1,7 @@
+{
+  url = "https://github.com/OpenModelica/OpenModelica/";
+  rev = "49be4faa5a625a18efbbd74cc2f5be86aeea37bb";
+  sha256 = "0klqiy4sdizl1djb9hb0arcvfcjz2mmnakrjx81mmxcbr8yq2016";
+  fetchSubmodules = true;
+}
+# Update with: nix run -f ./nixpkgs/default.nix nix-prefetch-git -c nix-prefetch-git 'https://github.com/OpenModelica/OpenModelica/' 'v1.18.0' --fetch-submodules

pkgs/applications/science/misc/openmodelica/omcompiler/default.nix

@@ -0,0 +1,85 @@
+{
+  stdenv,
+  lib,
+  gfortran,
+  flex,
+  bison,
+  jre8,
+  blas,
+  lapack,
+  curl,
+  readline,
+  expat,
+  pkg-config,
+  buildPackages,
+  targetPackages,
+  libffi,
+  binutils,
+  mkOpenModelicaDerivation,
+}:
+let
+  isCross = stdenv.buildPlatform != stdenv.hostPlatform;
+  nativeOMCompiler = buildPackages.openmodelica.omcompiler;
+in
+mkOpenModelicaDerivation (
+  {
+    pname = "omcompiler";
+    omtarget = "omc";
+    omdir = "OMCompiler";
+    omdeps = [ ];
+    omautoconf = true;
+
+    nativeBuildInputs = [
+      jre8
+      gfortran
+      flex
+      bison
+      pkg-config
+    ]
+    ++ lib.optional isCross nativeOMCompiler;
+
+    buildInputs = [
+      targetPackages.stdenv.cc.cc
+      blas
+      lapack
+      curl
+      readline
+      expat
+      libffi
+      binutils
+    ];
+
+    postPatch = ''
+      sed -i -e '/^\s*AR=ar$/ s/ar/${stdenv.cc.targetPrefix}ar/
+                 /^\s*ar / s/ar /${stdenv.cc.targetPrefix}ar /
+                 /^\s*ranlib/ s/ranlib /${stdenv.cc.targetPrefix}ranlib /' \
+          $(find ./OMCompiler -name 'Makefile*')
+    '';
+
+    env.CFLAGS = toString [
+      "-Wno-error=dynamic-exception-spec"
+      "-Wno-error=implicit-function-declaration"
+    ];
+
+    preFixup = ''
+      for entry in $(find $out -name libipopt.so); do
+        patchelf --shrink-rpath --allowed-rpath-prefixes "$NIX_STORE" "$entry"
+        patchelf --set-rpath '$ORIGIN':"$(patchelf --print-rpath $entry)" "$entry"
+      done
+    '';
+
+    meta = with lib; {
+      description = "Modelica compiler from OpenModelica suite";
+      homepage = "https://openmodelica.org";
+      license = licenses.gpl3Only;
+      maintainers = with maintainers; [
+        balodja
+        smironov
+      ];
+      platforms = platforms.linux;
+    };
+  }
+  // lib.optionalAttrs isCross {
+    configureFlags = [ "--with-omc=${nativeOMCompiler}/bin/omc" ];
+  }
+)

pkgs/applications/science/misc/openmodelica/omedit/default.nix

@@ -0,0 +1,59 @@
+{
+  lib,
+  jre8,
+  qmake,
+  qtbase,
+  qttools,
+  qtwebkit,
+  qtxmlpatterns,
+  binutils,
+  wrapQtAppsHook,
+  openmodelica,
+  openscenegraph,
+  mkOpenModelicaDerivation,
+}:
+with openmodelica;
+mkOpenModelicaDerivation {
+  pname = "omedit";
+  omdir = "OMEdit";
+  omdeps = [
+    omcompiler
+    omplot
+    omparser
+    omsimulator
+  ];
+  omautoconf = true;
+
+  nativeBuildInputs = [
+    jre8
+    qmake
+    qtbase
+    qttools
+    wrapQtAppsHook
+  ];
+
+  buildInputs = [
+    qtwebkit
+    openscenegraph
+    qtxmlpatterns
+    binutils
+  ];
+
+  postPatch = ''
+    sed -i ''$(find -name qmake.m4) -e '/^\s*LRELEASE=/ s|LRELEASE=.*$|LRELEASE=${lib.getDev qttools}/bin/lrelease|'
+  '';
+
+  dontUseQmakeConfigure = true;
+  QMAKESPEC = "linux-clang";
+
+  meta = with lib; {
+    description = "Modelica connection editor for OpenModelica";
+    homepage = "https://openmodelica.org";
+    license = licenses.gpl3Only;
+    maintainers = with maintainers; [
+      balodja
+      smironov
+    ];
+    platforms = platforms.linux;
+  };
+}

pkgs/applications/science/misc/openmodelica/omlibrary/default.nix

@@ -0,0 +1,45 @@
+{
+  lib,
+  stdenv,
+  fetchgit,
+  bash,
+  openmodelica,
+  mkOpenModelicaDerivation,
+}:
+let
+  fakegit = import ./fakegit.nix {
+    inherit
+      lib
+      stdenv
+      fetchgit
+      bash
+      ;
+  };
+in
+mkOpenModelicaDerivation {
+  pname = "omlibrary";
+  omdir = "libraries";
+  omtarget = "omlibrary-all";
+  omdeps = [ openmodelica.omcompiler ];
+
+  postPatch = ''
+    patchShebangs --build libraries
+    cp -fv ${fakegit}/bin/checkout-git.sh libraries/checkout-git.sh
+
+    # The EMOTH library is broken in OpenModelica 1.17.0
+    # Let's remove it from targets.
+    sed -i -e '/^OTHER_LIBS=/ s/EMOTH //' libraries/Makefile.libs
+  '';
+
+  meta = with lib; {
+    description = "Collection of Modelica libraries to use with OpenModelica,
+including Modelica Standard Library";
+    homepage = "https://openmodelica.org";
+    license = licenses.gpl3Only;
+    maintainers = with maintainers; [
+      balodja
+      smironov
+    ];
+    platforms = platforms.linux;
+  };
+}

pkgs/applications/science/misc/openmodelica/omlibrary/fakegit.nix

@@ -0,0 +1,55 @@
+{
+  lib,
+  stdenv,
+  fetchgit,
+  bash,
+}:
+let
+  mkscript = path: text: ''
+    mkdir -pv `dirname ${path}`
+    cat > ${path} <<"EOF"
+    #!${bash}/bin/bash
+    ME=$(basename ${path})
+    ${text}
+    EOF
+    sed -i "s@%out@$out@g" ${path}
+    chmod +x ${path}
+  '';
+
+  hashname =
+    r:
+    let
+      rpl = lib.replaceStrings [ ":" "/" ] [ "_" "_" ];
+    in
+    (rpl r.url) + "-" + (rpl r.rev);
+
+in
+stdenv.mkDerivation {
+  name = "fakegit";
+
+  buildCommand = ''
+    mkdir -pv $out/repos
+    ${lib.concatMapStrings (
+      r: "cp -r ${fetchgit r} $out/repos/${hashname r}\n"
+    ) (import ./src-libs.nix)}
+
+    ${mkscript "$out/bin/checkout-git.sh" ''
+      if test "$#" -ne 4; then
+        echo "Usage: $0 DESTINATION URL GITBRANCH HASH"
+        exit 1
+      fi
+      DEST=$1
+      URL=`echo $2 | tr :/ __`
+      GITBRANCH=$3
+      REVISION=$4
+
+      REVISION=`echo $REVISION | tr :/ __`
+
+      rm -rf $DEST
+      mkdir -pv $DEST
+      echo "FAKEGIT cp -r %out/repos/$URL-$REVISION $DEST" >&2
+      cp -r %out/repos/$URL-$REVISION/* $DEST
+      chmod u+w -R $DEST
+    ''}
+  '';
+}

pkgs/applications/science/misc/openmodelica/omlibrary/src-libs.nix

@@ -0,0 +1,476 @@
+[
+  {
+    url = "https://github.com/modelica-3rdparty/AdvancedNoise.git";
+    rev = "5ce57acd279dadd0d25b76a6b02d3f9e9d061246";
+    sha256 = "07jjbj0y6bak269md3xniqb5lgc33m92ar5qixqxj5yxdjaahfs2";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/RWTH-EBC/AixLib.git";
+    rev = "65e49ddf5c935846888a61aa303e52c909619079";
+    sha256 = "18xn8j3x3j4x9bpjgqnq0b6p3yzzsg5n62fv1ldqbbjcmi0vimd5";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/RWTH-EBC/AixLib.git";
+    rev = "v0.4.0";
+    sha256 = "0dw34mjq29n55xh51g1c9a9d0d8gbpn16gj309dfxn4v2hbnfvzx";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/modelica-3rdparty/AlgebraTestSuite.git";
+    rev = "b937e1a7f447138c59abec9b2092f84f16bf02e8";
+    sha256 = "0406inasx61dk7vcnziiyhxkna7g61a5hn0znnbxj817hz6q11zn";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/modelica-3rdparty/ApproxSpline.git";
+    rev = "28420f5c1a88c9cd069defbd8c05e4a78a090675";
+    sha256 = "07gpyi2brj5zpvrlsnflqjnhbrgxvpqbdshp8lp4lh9mnj5jv95d";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/OpenModelica/BioChem.git";
+    rev = "v1.0.2";
+    sha256 = "037bvj2lqrslg8k5r0rjgdzccslj9bj25b55k4g440vabm5p05qm";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/modelica-3rdparty/BondGraph.git";
+    rev = "20c23e60d12989bd4668ccac47659d82d39d29cc";
+    sha256 = "0yrkk708v4bvf423xb4zgpmnaj8qhq5primdg758ayddgli23wa9";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/modelica-3rdparty/BrineProp.git";
+    rev = "834fb3519ca8f89efe268582d39d00a7c3991150";
+    sha256 = "1iwqh4kr36wgxc0gci63gdgbqln2sap1w4bkydk1vkss2s302lg4";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/EDF-TREE/BuildSysPro.git";
+    rev = "v3.3.0";
+    sha256 = "1cvcany3q9p1xndarxa2d8mmqxdnqk22476q8l61nayz5qy25x61";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/modelica-3rdparty/BuildingControlLib.git";
+    rev = "v1.0.0";
+    sha256 = "0ckdxway0m755mbrl94k4458sijzgknlzsrf7xs5bjymxchm8r2m";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/modelica-3rdparty/BuildingSystems.git";
+    rev = "c3070d48015ee75c1577f349cb388a498bef7270";
+    sha256 = "0r876wm6f1xx4cli1lqlylpl3zgaddmy06hcafbnzry9j38vbz4y";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/lbl-srg/modelica-buildings.git";
+    rev = "v6.0.0";
+    sha256 = "0rnnk1clji0myzr7adggki6knbl6v8381vwnqgiz8mkxbmzdwm4f";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/lbl-srg/modelica-buildings.git";
+    rev = "v7.0.0";
+    sha256 = "04n04pp4zvyg8n8h7h79c3wyk7lmn940mh7qzs0lv76g1ybypnlz";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/modelica-3rdparty/Chemical.git";
+    rev = "5645573fced862430b7b598b4d7ec1a39c7aa0fa";
+    sha256 = "1kh7kpmjfz55pb8553srlnrh8l00nw21xf5mjzh7nx9b1rndnmyg";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/modelica-3rdparty/DeployStructLib.git";
+    rev = "v1.0";
+    sha256 = "1k4zw9lnd0javw4zigxc15l58yf7xdz36b7808g65qxy89w6ksr2";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/modelica-3rdparty/DisHeatLib.git";
+    rev = "b11f53379c122870a52f2da9b1705d2c911cd21d";
+    sha256 = "1vm96a4z0b40r0nisxrrzyvan4yphjdkx4ad655phva2636xb5rr";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/AHaumer/DriveControl.git";
+    rev = "b7233fd97a92867bb4ec2c3647c7f7e888398644";
+    sha256 = "0nyp1n8wrkjzfypsmjjzac0g9p4wbc1cxxr040fj20bqdg9l3h1b";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/christiankral/ElectroMechanicalDrives.git";
+    rev = "v2.2.0";
+    sha256 = "0012phmn1y9fgpph45lwbjk0yhm5czidf2z6khm8lddvk93wf31b";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/modelica-3rdparty/ExternData.git";
+    rev = "v2.5.0";
+    sha256 = "19dsyq1mk5vl54fqaffzqafm5w94l011cy7pg16c7i933dbqnkki";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/modelica/ExternalMedia.git";
+    rev = "6138312c96142ff3c01190147e6277991bfa2fca";
+    sha256 = "1d9g2hbdvgz13j7kdi1kglkkllj9f00x3dwdp5piyypvs464jsn5";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/modelica-3rdparty/ExternalMemoryLib.git";
+    rev = "6488d5815bda23c665123baa916789e283e16d2c";
+    sha256 = "06y1i5w690b3b9x23nzls8y67fl7yd7bn4xl5j0dmyi4qx33aqda";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/modelica-3rdparty/FMITest.git";
+    rev = "a67a276083f4010b249802ad8fc70dc30c09adfd";
+    sha256 = "0mg8jlvlwql2nsjiy7c3rdibv73bkfk149ac0450d5pc0hfn9mln";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/modelica-3rdparty/FailureModes.git";
+    rev = "v1.2.1";
+    sha256 = "1z8bwrld1rkydgssab5gnrd76frrbky8qxi1lvlaf2jidj6bzn1l";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/modelica-3rdparty/FaultTriggering.git";
+    rev = "v0.6.6";
+    sha256 = "0a08yyrbg4a49s0bgqgyds6pidx9xr47yspvl9bdak1mq34qibip";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/modelica-3rdparty/FeedDriveLibrary.git";
+    rev = "1.0.1";
+    sha256 = "15fi9dj6zgl0fr90cwxqjbpphj0dwrrmk74hf25j6zd85w2ycqdz";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/DLR-SR/FractionalOrder.git";
+    rev = "99918820e346c362c3ad52d782c8215e5deeac4c";
+    sha256 = "1pycss6fqh86frfdbdfffjhaz09fz1558f9azgckhf8drx6ry1qs";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/modelica-3rdparty/Greenhouses-Library.git";
+    rev = "89ae0e8097eb0751abce2013d304fa5f9c09b885";
+    sha256 = "1q77xj6aysqsn3d7kjmcq7dihbw18iqm35ifzdi75xgf3cgwla4f";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/christiankral/HanserModelica.git";
+    rev = "v1.1.0";
+    sha256 = "0zwkrhg2y42m18p4z51izrickiv1vikgz0z7fpjia4dbppckav8i";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/modelica-3rdparty/HelmholtzMedia.git";
+    rev = "3b4a4bca94d388744b2d045344ea2f9b0b4d405b";
+    sha256 = "17fzpan89075vb5vbhw5ylgxcdsmj2vjnmmka7cgzh06izb69nvh";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/ibpsa/modelica-ibpsa.git";
+    rev = "v3.0.0";
+    sha256 = "0xwgfndlw76zfmiiqadl85l9na9igsqlmfcawx526sdw2lhhgics";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/open-ideas/IDEAS.git";
+    rev = "v2.1.0";
+    sha256 = "0xp0zg6ib5536d5vl361lsn5w5faqdf6djhcmfxns629wjima8rn";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/modelica-3rdparty/IndustrialControlSystems.git";
+    rev = "v1.1.0";
+    sha256 = "1nvgx94iy1pws0768anrl7ssjlzslb5mbp21j7xvf6wpqfmj0npc";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/christiankral/KeyWordIO.git";
+    rev = "v0.9.0";
+    sha256 = "10kvj6zn2r6m3403ja8nkkxbfcchkz0pfk3g70ibr76zivxb5nim";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/FishSim/LibRAS.git";
+    rev = "fca9de50a484a2213f3ca1b39e275c237c471688";
+    sha256 = "0w1c87sifq8klq0f2l70qxjrlvahyxy1cx9rln80rni4d427yc1k";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/modelica-3rdparty/LinearMPC.git";
+    rev = "v1.0";
+    sha256 = "1crj60i5f33l9pgip0xbv6ankcga7px0644cj7c2wnzn1fjmn2k8";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/looms-polimi/MEV.git";
+    rev = "v1.0.1";
+    sha256 = "1a7ih9lc01wzaq8a8aznggpi4aqnczyzq49q5hc4fqvmfwl7l0j3";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/modelica-3rdparty/ModPowerSystems.git";
+    rev = "df3afce27d5e935c4111f392275744a655abe216";
+    sha256 = "1b1fikm92lv6gj82imka3hxbjwv04i4h33y69yhcxdpqa6z6hm4z";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/OpenModelica/OpenModelica-ModelicaStandardLibrary.git";
+    rev = "4a91d52248b0f17415bba1d58881fc730bd94215";
+    sha256 = "19caxz6hvlrsls3b2387a24zwwnykbb138jpb42gwpy8jlh93yzi";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/OpenModelica/OpenModelica-ModelicaStandardLibrary.git";
+    rev = "cab27240a4a3ed4ea137226f056bbc0d79543f7a";
+    sha256 = "06y911i2hs7hg4ykhb8wngvxhwnaww8rsakwa7ssd047a7glzsb0";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/modelica-3rdparty/Modelica-Arduino.git";
+    rev = "v0.1.0";
+    sha256 = "1n34dksqhrn1synv2mp2ifk4dxyhp15f5v1jb1b3dbw9n19951qb";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/modelica-3rdparty/Modelica-GNU_ScientificLibrary.git";
+    rev = "9235ab28bdd7f0fe3e7abba48af53d73332858ec";
+    sha256 = "168g9gg12lfa863ifs41bnx6yd0yyjnal6986dgpm51dj5arw6id";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/modelica-3rdparty/Modelica-MVEM.git";
+    rev = "v1.0.1";
+    sha256 = "1p68691dnl06lgwm4bl9g036brn4vl7m5x3gq4rxc291339frixk";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/modelica-3rdparty/ModelicaADS.git";
+    rev = "v1.0.1";
+    sha256 = "0fhxrl07d7v3wa79d30psm1gxydc0p7s2akfirdx6dai0633skp9";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/xogeny/ModelicaBook.git";
+    rev = "v0.6.0";
+    sha256 = "0yqbll6p738yvpi1x11cjngpz2glda07mljrkjlm23p7l53x63dc";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/modelica-compliance/compliance.git";
+    rev = "8a91e75d8a26acc4de30fc0e5d5e9db83c970bd6";
+    sha256 = "1cym1wlgsvfrryq8zqzzrgs4wam1l7pc20q07hk3d615nhq21lg6";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/modelica-3rdparty/ModelicaDFR.git";
+    rev = "37a441934d05330cf3d13e9ec551954d27eca84c";
+    sha256 = "13rpcs8cl9x15vi655150zmhmg1iaxpzvxrl3rqif46zpl5dhlj2";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/modelica/Modelica_DeviceDrivers.git";
+    rev = "v1.8.2";
+    sha256 = "16c0p9zn0qrraz59ivinibmikdd251plm1vqngznzhksjwvz6bja";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/modelica/Modelica_LinearSystems2.git";
+    rev = "v2.3.5";
+    sha256 = "0rzicynqgayydxqynnairxk7ybg4alv1xnfz8cgkrpicl2g9bacg";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/modelica-3rdparty/Modelica_Requirements.git";
+    rev = "a427b5cb7997e9036c577d219e6b8a5d0c28389a";
+    sha256 = "1ihx46kifnfi9kw1g8nmd9sarl766whbzdk6a44alczsya4gg45k";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/modelica/Modelica_Synchronous.git";
+    rev = "c8350276bfd945086962cf4150ba941b9c57ed13";
+    sha256 = "12ad7fpjy50ky3lvl65r9d5xvlzvw5yqdnbp4rsgl3qw7s3wrmja";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/jwindahlModelon/MultiPhaseMixtureMedia.git";
+    rev = "0bda0c58af6384f8e0edf7aa7520afb369af3e38";
+    sha256 = "11bqm69504bh4h05dxlwdmjfxwls06mr49cz47kl8jmrygkfi4i2";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/OpenIPSL/OpenIPSL.git";
+    rev = "v1.5.0";
+    sha256 = "09xrcz0rdxdy220ki5zyl7920y0a4lg24p0aibna4ad15vszhhwj";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/modelica-3rdparty/Optimisers.git";
+    rev = "e33c69edaad6dad8029167b0ca00533964a6fe37";
+    sha256 = "0hcxsrr2n4fzaxdjvgvqayz38kpfk86cclvg5pzcfmjc5bznb8bs";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/lochel/PNlib.git";
+    rev = "059545d48dd9ceeccfa3b4e47689ec8dd334dcd8";
+    sha256 = "1a0hxkgsi4klw9c8zav1dy2p1c85ald29gx82hfacwv55xl9f127";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/modelica-3rdparty/PVSystems.git";
+    rev = "v0.6.2";
+    sha256 = "0vcgvdaqfbn46lpzk0kvsif3d55wf8yzhkbdpf5zv04kv7zw25w9";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/modelica-3rdparty/PhotoVoltaics.git";
+    rev = "v1.6.0";
+    sha256 = "0zqx77z217iln3vfxn2v3c2jl0jz5kgcd96ylvimjnwr30mxr09n";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/MarekMatejak/Physiolibrary.git";
+    rev = "v2.3.1";
+    sha256 = "0nxfw63m278gaff18zz29n2s1vk4kwdbv2qvbjmcq86fl1i5b3bg";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/modelica-3rdparty/Physiomodel.git";
+    rev = "v1.0.0";
+    sha256 = "1sdhv5qgjqv3zdq57pkkrh04ainwv9n5zqd8mb9a3ybjmwdjf6f9";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/dzimmer/PlanarMechanics.git";
+    rev = "55224a9e76de8aa7f708236bd4d7dee624ecba50";
+    sha256 = "0hf7vi44adss86x5ahk5if7bdjgw773d8mb3d8ianq12g8azycyd";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/PowerGrids/PowerGrids.git";
+    rev = "v1.0.0";
+    sha256 = "06bx8mqvmizhfwg99djdfgh2mblc4wzmg0zq4ilrp586jwfninmz";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/modelica/PowerSystems.git";
+    rev = "v1.0.0";
+    sha256 = "1xwhwich7gi6vl33zl2r78xdjklchgkjcnvww6390j20l1wjznkn";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/modelica/PowerSystems.git";
+    rev = "f0721333f4875143565147a7d043bee1c300873b";
+    sha256 = "0gbvx0gzf3akb0w7yvdxfq2y4ps91cy5b93iwnvnw7652x716813";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/modelica-3rdparty/RealTimeCoordinationLibrary.git";
+    rev = "v1.0.2";
+    sha256 = "0ch4la04hm059ii5wzph9gsbvqhnfqrvvpqi57qn27bm10c4la0m";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/casella/ScalableTestSuite.git";
+    rev = "v1.11.5";
+    sha256 = "0bhj1q9b8d29nrbr253zszy1w1yvyizvyr3law1pqjj6mhbqmg4i";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/modelica-3rdparty/Servomechanisms.git";
+    rev = "3bf82ba5d3f31b4a0ae05f99ae690037358e153e";
+    sha256 = "1swka7d58wkg5pqv59lqgfi7gv6rg5vra4j6r76pn9czx9ddal8w";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/SolarTherm/SolarTherm.git";
+    rev = "203fb5af3b95c731c7fcbe2833d51fd420e80796";
+    sha256 = "1bh4y4igzd0k59xm8j14p52gnlbwkiwwy6bhhyarpr361yrchn33";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/modelica-3rdparty/Soltermica.git";
+    rev = "9f7224bd89335f95dffe1ccdaa094df5a3279fdf";
+    sha256 = "1bif3cnwjas6x7b8ahwkm7dbrqrfdqwwa26zmdc6zrpfncl3kqd0";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/modelica-3rdparty/SystemDynamics.git";
+    rev = "2f6bd9382c5aac2aff9148cd9113a418767734b6";
+    sha256 = "0ii2mj6ngwjir3gzyad8wsj86pvd6wzal91nz2y7gzwj1djchb3x";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/thom-marx/ThermalSeparation.git";
+    rev = "ffa0495ba829ecab105be4bfb3b7652625ec9c03";
+    sha256 = "1czm97bcrpp2jv0a0kd31a929wqlrlzdhdxvyy4w499dn20jzv1l";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/casella/ThermoPower.git";
+    rev = "650be2c8cbd5abc3535e92b865e509073afc8aeb";
+    sha256 = "08ijrx8xw43dadz5s3kiwa17ax9faq2wyq9gm0vlz9ddbkj0hcaq";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://openmodelica.org/git/ThermoSysPro.git";
+    rev = "db81ae1b5a6a85f6c6c7693244cafa6087e18ff5";
+    sha256 = "12fsf0xxxc1ja6vmm9ff85f8j5sg1lb7w4g57s2w3fkf4d3a7d0c";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://openmodelica.org/git/ThermoSysPro.git";
+    rev = "5cef9acb4dedf8af6f4638a4448f08a544ebd30b";
+    sha256 = "0ihnz1s4rs42yis9zym9nw29ia2lqz2yx2wblc50p6f221w7q78s";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/lenaRB/VVDRlib.git";
+    rev = "eae4981674642eddffc7f2aa3690320fcaddee0e";
+    sha256 = "0qxxk2xlas5mqyc1h8ndic208qj1sm5mr5y8664kv3py7i8jdqi4";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/modelica/VehicleInterfaces.git";
+    rev = "v1.2.5";
+    sha256 = "044k17cpc88wprrvw03p6crm6dy6x9a6xj5104d5nln71lqz5sdq";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/modelica-3rdparty/WasteWater.git";
+    rev = "v2.1.0";
+    sha256 = "1dxr4m9j7b5266daj4klbrhvnkqr73sximdw9bk9v5qf0s28li99";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/modelica-3rdparty/WindPowerPlants.git";
+    rev = "v1.2.0";
+    sha256 = "1lyrqwsb6sm1wc7vlj72zk5cpjhhzh27fviiqayddqy2b903xish";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/modelica-3rdparty/ipsl.git";
+    rev = "v1.1.1";
+    sha256 = "1w2iah8c5d8n01wmxydjk0rrcxh88g8yjy2zmv403azcccq7byzp";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/modelica-3rdparty/netCDF-DataReader.git";
+    rev = "v2.5.0";
+    sha256 = "1pd5xf5bgz010lryv8bj6lvlfqn9p184csiffwj8icx7rycnlcqb";
+    fetchSubmodules = true;
+  }
+  {
+    url = "https://github.com/joewa/open-bldc-modelica.git";
+    rev = "58a83b5b36f267613de4676c95163489b1ddc2e7";
+    sha256 = "0wf6dn64d2psv9b3xg5227vzpk109r3dqzi4m2wwhrilaxs3v004";
+    fetchSubmodules = true;
+  }
+]

pkgs/applications/science/misc/openmodelica/omlibrary/update-src-libs.sh

@@ -0,0 +1,39 @@
+#!/usr/bin/env nix-shell
+#! nix-shell -i bash -p bash
+
+CWD=$PWD
+
+chko() {
+  (
+    T=`mktemp -d`
+    trap "rm -rf $T" EXIT INT PIPE
+    cd $T
+    cat >check.nix <<EOF
+with import <nixpkgs> {};
+fetchgit `cat $CWD/../mkderivation/src-main.nix`
+EOF
+    nix-build check.nix
+    cat result/libraries/Makefile.libs
+  )
+}
+
+getsha256() {
+  URL=$(echo "$1" | sed 's/^"\(.*\)"$/\1/')
+  REV=$(echo "$2" | sed 's/^"\(.*\)"$/\1/')
+  SHA=$(nix run nixpkgs.nix-prefetch-git -c nix-prefetch-git --fetch-submodules "$URL" "$REV" 2>/dev/null | sed -n 's/.*"sha256": "\(.*\)",/\1/g p')
+  echo "{ url = $1; rev = $2; sha256 = \"$SHA\"; fetchSubmodules = true; }"
+}
+
+OUT=src-libs.nix
+
+echo '[' > $OUT
+
+chko |
+grep checkout-git.sh |
+tr \' \" |
+while read NM TGT URL BR REV ; do
+  echo Trying $TGT $URL $REV >&2
+  getsha256 $URL $REV >> $OUT || exit 1
+done
+
+echo ']' >> $OUT

pkgs/applications/science/misc/openmodelica/omparser/Makefile.in.patch

@@ -0,0 +1,22 @@
+--- a/Makefile.in
++++ b/Makefile.in
+@@ -23,7 +23,7 @@
+ omedit-testsuite: omedit-testsuite.skip
+ omedit-testsuite.skip: omedit.skip testsuite-depends
+ 	$(MAKE) -f $(defaultMakefileTarget) -C OMEdit/Testsuite
+-omparser: omparser.skip
++omparser: build-dirs omparser.skip
+ omparser.skip:
+ 	test -f $@ || $(MAKE) -C OMParser OMBUILDDIR=@OMBUILDDIR@ "host_short=@host_short@" CC="@CC@" CXX="@CXX@" CFLAGS="@CFLAGS@" CPPFLAGS="@CPPFLAGS@" CXXFLAGS="@CXXFLAGS@"
+ omsimulator: omsimulator.skip
+@@ -134,6 +134,10 @@
+ INSTALL_JAVADIR    = ${DESTDIR}${datadir}/omc/java
+ INSTALL_LOCALEDIR  = ${DESTDIR}${datadir}/locale
+ 
++build-dirs:
++	mkdir -p "@OMBUILDDIR@"/lib/@host_short@/omc
++	mkdir -p "@OMBUILDDIR@"/include/omc
++
+ install-dirs:
+ 	@test ! "${DESTDIR}/@prefix@" -ef "@OMBUILDDIR@" || (echo Error: Install and build dirs are the same && false)
+ 	if [ "@APP@" = ".app" ]; then mkdir -p ${INSTALL_APPDIR}; fi

pkgs/applications/science/misc/openmodelica/omparser/default.nix

@@ -0,0 +1,35 @@
+{
+  lib,
+  pkg-config,
+  jre8,
+  libuuid,
+  openmodelica,
+  mkOpenModelicaDerivation,
+}:
+
+mkOpenModelicaDerivation {
+  pname = "omparser";
+  omdir = "OMParser";
+  omdeps = [ openmodelica.omcompiler ];
+
+  nativeBuildInputs = [ pkg-config ];
+
+  buildInputs = [
+    jre8
+    libuuid
+  ];
+
+  patches = [ ./Makefile.in.patch ];
+
+  meta = with lib; {
+    description = "Antlr4-based parser of Modelica files from OpenModelica
+suite";
+    homepage = "https://openmodelica.org";
+    license = licenses.gpl3Only;
+    maintainers = with maintainers; [
+      balodja
+      smironov
+    ];
+    platforms = platforms.linux;
+  };
+}

pkgs/applications/science/misc/openmodelica/omplot/default.nix

@@ -0,0 +1,43 @@
+{
+  lib,
+  qtbase,
+  qttools,
+  qmake,
+  wrapQtAppsHook,
+  openmodelica,
+  mkOpenModelicaDerivation,
+}:
+
+mkOpenModelicaDerivation {
+  pname = "omplot";
+  omdir = "OMPlot";
+  omdeps = [ openmodelica.omcompiler ];
+  omautoconf = true;
+
+  nativeBuildInputs = [
+    qtbase
+    qttools
+    qmake
+    wrapQtAppsHook
+  ];
+
+  postPatch = ''
+    sed -i OMPlot/Makefile.in -e 's|bindir = @includedir@|includedir = @includedir@|'
+    sed -i OMPlot/OMPlot/OMPlotGUI/*.pro -e '/INCLUDEPATH +=/s|$| ../../qwt/src|'
+    sed -i ''$(find -name qmake.m4) -e '/^\s*LRELEASE=/ s|LRELEASE=.*$|LRELEASE=${lib.getDev qttools}/bin/lrelease|'
+  '';
+
+  dontUseQmakeConfigure = true;
+  QMAKESPEC = "linux-clang";
+
+  meta = with lib; {
+    description = "Plotting tool for OpenModelica-generated results files";
+    homepage = "https://openmodelica.org";
+    license = licenses.gpl3Only;
+    maintainers = with maintainers; [
+      balodja
+      smironov
+    ];
+    platforms = platforms.linux;
+  };
+}

pkgs/applications/science/misc/openmodelica/omshell/default.nix

@@ -0,0 +1,58 @@
+{
+  lib,
+  qttools,
+  qmake,
+  qtwebkit,
+  wrapQtAppsHook,
+  readline,
+  openmodelica,
+  mkOpenModelicaDerivation,
+}:
+
+mkOpenModelicaDerivation {
+  pname = "omshell";
+  omdir = "OMShell";
+  omdeps = [ openmodelica.omcompiler ];
+  omautoconf = true;
+
+  nativeBuildInputs = [
+    qmake
+    wrapQtAppsHook
+  ];
+
+  buildInputs = [
+    readline
+    qtwebkit
+  ];
+
+  postPatch = with openmodelica; ''
+    sed -i ''$(find -name qmake.m4) -e '/^\s*LRELEASE=/ s|LRELEASE=.*$|LRELEASE=${lib.getDev qttools}/bin/lrelease|'
+    sed -i OMShell/OMShell/OMShellGUI/*.pro -e '
+      s|\$\$\[QT_INSTALL_BINS\]/lrelease|${lib.getDev qttools}/bin/lrelease|
+      /^\s*OMCLIBS =/ s|\$\$(OMBUILDDIR)|${omcompiler}|
+      /^\s*OMCINC =/ s|\$\$(OMBUILDDIR)|${omcompiler}|
+    '
+    sed -i OMShell/OMShell/OMShellGUI/OMShell.config.in -e '
+      s|@OMBUILDDIR@|${omcompiler}|
+      s|@OPENMODELICAHOME@|${omcompiler}|
+    '
+    sed -i OMShell/mosh/src/Makefile.in -e '
+      /^CFLAGS =/ s|-I../../../build|-I${omcompiler}|
+      /^LIBS =/ s|-L@OMBUILDDIR@|-L${omcompiler}|
+      '
+  '';
+
+  dontUseQmakeConfigure = true;
+  QMAKESPEC = "linux-clang";
+
+  meta = with lib; {
+    description = "Interactive OpenModelica session shell";
+    homepage = "https://openmodelica.org";
+    license = licenses.gpl3Only;
+    maintainers = with maintainers; [
+      balodja
+      smironov
+    ];
+    platforms = platforms.linux;
+  };
+}

pkgs/applications/science/misc/openmodelica/omsimulator/default.nix

@@ -0,0 +1,48 @@
+{
+  lib,
+  pkg-config,
+  boost,
+  readline,
+  libxml2,
+  openmodelica,
+  mkOpenModelicaDerivation,
+  fetchpatch,
+}:
+
+mkOpenModelicaDerivation {
+  pname = "omsimulator";
+  omdir = "OMSimulator";
+  omdeps = [ openmodelica.omcompiler ];
+
+  patches = [
+    (fetchpatch {
+      url = "https://github.com/OpenModelica/OMSimulator/commit/5ef06e251d639a0224adc205cdbfa1f99bf9a956.patch";
+      stripLen = 1;
+      extraPrefix = "OMSimulator/";
+      hash = "sha256-hLsS6TNEjddm2o2Optnf8n6hh14up9bWJBoztNmisH0=";
+    })
+  ];
+
+  nativeBuildInputs = [ pkg-config ];
+
+  buildInputs = [
+    readline
+    libxml2
+    boost
+  ];
+
+  env.CFLAGS = toString [
+    "-Wno-error=implicit-function-declaration"
+  ];
+
+  meta = with lib; {
+    description = "OpenModelica FMI & SSP-based co-simulation environment";
+    homepage = "https://openmodelica.org";
+    license = licenses.gpl3Only;
+    maintainers = with maintainers; [
+      balodja
+      smironov
+    ];
+    platforms = platforms.linux;
+  };
+}

pkgs/applications/science/misc/openmvs/default.nix

@@ -0,0 +1,79 @@
+{
+  lib,
+  boost,
+  ceres-solver,
+  cgal,
+  cmake,
+  eigen,
+  fetchFromGitHub,
+  glfw,
+  gmp,
+  libjpeg,
+  libpng,
+  libtiff,
+  mpfr,
+  opencv,
+  openmp,
+  pkg-config,
+  stdenv,
+  vcg,
+  zstd,
+}:
+
+let
+  boostWithZstd = boost.overrideAttrs (old: {
+    buildInputs = old.buildInputs ++ [ zstd ];
+  });
+in
+stdenv.mkDerivation rec {
+  version = "2.2.0";
+  pname = "openmvs";
+
+  src = fetchFromGitHub {
+    owner = "cdcseacave";
+    repo = "openmvs";
+    rev = "v${version}";
+    hash = "sha256-j/tGkR73skZiU+bP4j6aZ5CxkbIcHtqKcaUTgNvj0C8=";
+    fetchSubmodules = true;
+  };
+
+  # SSE is enabled by default
+  cmakeFlags = lib.optional (!stdenv.hostPlatform.isx86_64) "-DOpenMVS_USE_SSE=OFF";
+
+  buildInputs = [
+    boostWithZstd
+    ceres-solver
+    cgal
+    eigen
+    glfw
+    gmp
+    libjpeg
+    libpng
+    libtiff
+    mpfr
+    opencv
+    openmp
+    vcg
+  ];
+
+  nativeBuildInputs = [
+    cmake
+    pkg-config
+  ];
+
+  postInstall = ''
+    mv $out/bin/OpenMVS/* $out/bin
+    rmdir $out/bin/OpenMVS
+    rm $out/bin/Tests
+  '';
+
+  doCheck = true;
+
+  meta = {
+    description = "Open Multi-View Stereo reconstruction library";
+    homepage = "https://github.com/cdcseacave/openMVS";
+    license = lib.licenses.agpl3Only;
+    platforms = lib.platforms.unix;
+    maintainers = with lib.maintainers; [ bouk ];
+  };
+}

pkgs/applications/science/misc/sasview/default.nix

@@ -0,0 +1,79 @@
+{
+  lib,
+  python3,
+  fetchFromGitHub,
+  wrapQtAppsHook,
+}:
+
+python3.pkgs.buildPythonApplication rec {
+  pname = "sasview";
+  version = "5.0.6";
+  pyproject = true;
+
+  src = fetchFromGitHub {
+    owner = "SasView";
+    repo = "sasview";
+    rev = "refs/tags/v${version}";
+    hash = "sha256-cwP9VuvO4GPlbAxCqw31xISTi9NoF5RoBQmjWusrnzc=";
+  };
+
+  # AttributeError: module 'numpy' has no attribute 'float'.
+  postPatch = ''
+    substituteInPlace src/sas/sascalc/pr/p_invertor.py \
+      --replace "dtype=np.float)" "dtype=float)"
+  '';
+
+  nativeBuildInputs = [
+    python3.pkgs.pyqt5
+    python3.pkgs.setuptools
+    wrapQtAppsHook
+  ];
+
+  propagatedBuildInputs = with python3.pkgs; [
+    bumps
+    h5py
+    lxml
+    periodictable
+    pillow
+    pyparsing
+    pyqt5
+    qt5reactor
+    sasmodels
+    scipy
+    setuptools
+    xhtml2pdf
+  ];
+
+  postBuild = ''
+    ${python3.interpreter} src/sas/qtgui/convertUI.py
+  '';
+
+  dontWrapQtApps = true;
+
+  makeWrapperArgs = [
+    "\${qtWrapperArgs[@]}"
+  ];
+
+  nativeCheckInputs = with python3.pkgs; [
+    pytestCheckHook
+    unittest-xml-reporting
+  ];
+
+  enabledTestPaths = [
+    "test"
+  ];
+
+  disabledTests = [
+    # NoKnownLoaderException
+    "test_invalid_cansas"
+    "test_data_reader_exception"
+  ];
+
+  meta = {
+    description = "Fitting and data analysis for small angle scattering data";
+    homepage = "https://www.sasview.org";
+    changelog = "https://github.com/SasView/sasview/releases/tag/v${version}";
+    license = lib.licenses.bsd3;
+    maintainers = with lib.maintainers; [ rprospero ];
+  };
+}

pkgs/applications/science/misc/tulip/default.nix

@@ -0,0 +1,81 @@
+{
+  lib,
+  stdenv,
+  fetchurl,
+  libxml2,
+  freetype,
+  libGLU,
+  libGL,
+  glew,
+  qtbase,
+  wrapQtAppsHook,
+  autoPatchelfHook,
+  python3,
+  cmake,
+  libjpeg,
+  llvmPackages,
+}:
+
+stdenv.mkDerivation rec {
+  pname = "tulip";
+  version = "5.7.4";
+
+  src = fetchurl {
+    url = "mirror://sourceforge/auber/tulip-${version}_src.tar.gz";
+    hash = "sha256-7z21WkPi1v2AGishDmXZPAedMjgXPRnpUiHTzEnc5LY=";
+  };
+
+  nativeBuildInputs = [
+    cmake
+    wrapQtAppsHook
+  ]
+  ++ lib.optionals stdenv.hostPlatform.isLinux [ autoPatchelfHook ];
+
+  buildInputs = [
+    libxml2
+    freetype
+    glew
+    libjpeg
+    qtbase
+    python3
+  ]
+  ++ lib.optionals stdenv.hostPlatform.isDarwin [ llvmPackages.openmp ]
+  ++ lib.optionals stdenv.hostPlatform.isLinux [
+    libGLU
+    libGL
+  ];
+
+  qtWrapperArgs = [ ''--prefix PATH : ${lib.makeBinPath [ python3 ]}'' ];
+
+  env.NIX_CFLAGS_COMPILE =
+    # error: invalid conversion from 'unsigned char*' to 'char*'
+    "-fpermissive "
+    + (lib.optionalString stdenv.hostPlatform.isDarwin (toString [
+      # fatal error: 'Python.h' file not found
+      "-I${python3}/include/${python3.libPrefix}"
+      # error: format string is not a string literal (potentially insecure)
+      "-Wno-format-security"
+    ]));
+
+  # FIXME: "make check" needs Docbook's DTD 4.4, among other things.
+  doCheck = false;
+
+  meta = {
+    description = "Visualization framework for the analysis and visualization of relational data";
+
+    longDescription = ''
+      Tulip is an information visualization framework dedicated to the
+      analysis and visualization of relational data.  Tulip aims to
+      provide the developer with a complete library, supporting the design
+      of interactive information visualization applications for relational
+      data that can be tailored to the problems he or she is addressing.
+    '';
+
+    homepage = "http://tulip.labri.fr/";
+
+    license = lib.licenses.gpl3Plus;
+
+    maintainers = [ ];
+    platforms = lib.platforms.all;
+  };
+}

pkgs/applications/science/misc/vite/default.nix

@@ -0,0 +1,57 @@
+{
+  stdenv,
+  fetchFromGitLab,
+  lib,
+  cmake,
+  qtbase,
+  qttools,
+  qtcharts,
+  libGLU,
+  libGL,
+  glm,
+  glew,
+  wrapQtAppsHook,
+}:
+
+stdenv.mkDerivation {
+  pname = "vite";
+  version = "unstable-2022-05-17";
+
+  src = fetchFromGitLab {
+    domain = "gitlab.inria.fr";
+    owner = "solverstack";
+    repo = "vite";
+    rev = "6d497cc519fac623e595bd174e392939c4de845c";
+    hash = "sha256-Yf2jYALZplIXzVtd/sg6gzEYrZ+oU0zLG1ETd/hiTi0=";
+  };
+
+  nativeBuildInputs = [
+    cmake
+    qttools
+    wrapQtAppsHook
+  ];
+  buildInputs = [
+    qtbase
+    qtcharts
+    libGLU
+    libGL
+    glm
+    glew
+  ];
+
+  meta = {
+    description = "Visual Trace Explorer (ViTE), a tool to visualize execution traces";
+    mainProgram = "vite";
+
+    longDescription = ''
+      ViTE is a trace explorer. It is a tool to visualize execution
+      traces in Pajé or OTF format for debugging and profiling
+      parallel or distributed applications.
+    '';
+
+    homepage = "http://vite.gforge.inria.fr/";
+    license = lib.licenses.cecill20;
+    maintainers = [ ];
+    platforms = lib.platforms.linux;
+  };
+}