push sheeet

pkgs/by-name/be/bedtools/package.nix

@@ -0,0 +1,46 @@
+{
+  lib,
+  stdenv,
+  fetchFromGitHub,
+  zlib,
+  python3,
+  bzip2,
+  xz,
+}:
+
+stdenv.mkDerivation rec {
+  pname = "bedtools";
+  version = "2.31.1";
+
+  src = fetchFromGitHub {
+    owner = "arq5x";
+    repo = "bedtools2";
+    rev = "v${version}";
+    sha256 = "sha256-rrk+FSv1bGL0D1lrIOsQu2AT7cw2T4lkDiCnzil5fpg=";
+  };
+
+  strictDeps = true;
+
+  nativeBuildInputs = [
+    python3
+  ];
+
+  buildInputs = [
+    zlib
+    bzip2
+    xz
+  ];
+
+  cxx = if stdenv.cc.isClang then "clang++" else "g++";
+  cc = if stdenv.cc.isClang then "clang" else "gcc";
+  buildPhase = "make prefix=$out SHELL=${stdenv.shell} CXX=${cxx} CC=${cc} -j $NIX_BUILD_CORES";
+  installPhase = "make prefix=$out SHELL=${stdenv.shell} CXX=${cxx} CC=${cc} install";
+
+  meta = with lib; {
+    description = "Powerful toolset for genome arithmetic";
+    license = licenses.gpl2;
+    homepage = "https://bedtools.readthedocs.io/en/latest/";
+    maintainers = with maintainers; [ jbedo ];
+    platforms = platforms.unix;
+  };
+}