push sheeet

pkgs/by-name/de/deeptools/package.nix

@@ -0,0 +1,66 @@
+{
+  lib,
+  python3Packages,
+  fetchFromGitHub,
+  addBinToPathHook,
+}:
+
+python3Packages.buildPythonApplication rec {
+  pname = "deeptools";
+  version = "3.5.6";
+  pyproject = true;
+
+  src = fetchFromGitHub {
+    owner = "deeptools";
+    repo = "deepTools";
+    tag = version;
+    hash = "sha256-dxXlOvOjF4KSc5YO+1A5hlp95sfeyPSbmp93tihm7Vo=";
+  };
+
+  build-system = with python3Packages; [
+    setuptools
+  ];
+
+  dependencies = with python3Packages; [
+    numpy
+    scipy
+    matplotlib
+    pysam
+    numpydoc
+    pybigwig
+    py2bit
+    plotly
+    deeptoolsintervals
+  ];
+
+  nativeCheckInputs = with python3Packages; [
+    pytestCheckHook
+    addBinToPathHook
+  ];
+
+  disabledTestPaths = [
+    # tests trip on `len(sys.argv) == 1`
+    "deeptools/test/test_bigwigAverage.py"
+    "deeptools/test/test_bigwigCompare_and_multiBigwigSummary.py"
+    "deeptools/test/test_heatmapper.py"
+    "deeptools/test/test_multiBamSummary.py"
+  ];
+
+  meta = {
+    homepage = "https://deeptools.readthedocs.io/en/develop";
+    description = "Tools for exploring deep DNA sequencing data";
+    longDescription = ''
+      deepTools contains useful modules to process the mapped reads data for multiple
+      quality checks, creating normalized coverage files in standard bedGraph and bigWig
+      file formats, that allow comparison between different files (for example, treatment and control).
+      Finally, using such normalized and standardized files, deepTools can create many
+      publication-ready visualizations to identify enrichments and for functional
+      annotations of the genome.
+    '';
+    license = with lib.licenses; [
+      mit
+      bsd3
+    ];
+    maintainers = with lib.maintainers; [ scalavision ];
+  };
+}