push sheeet

pkgs/development/python-modules/nipype/default.nix

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+{
+  lib,
+  stdenv,
+  buildPythonPackage,
+  fetchPypi,
+  pythonOlder,
+  # python dependencies
+  click,
+  python-dateutil,
+  etelemetry,
+  filelock,
+  looseversion,
+  mock,
+  networkx,
+  nibabel,
+  numpy,
+  packaging,
+  prov,
+  psutil,
+  puremagic,
+  pybids,
+  pydot,
+  pytest,
+  pytest-xdist,
+  pytest-forked,
+  rdflib,
+  scipy,
+  simplejson,
+  traits,
+  xvfbwrapper,
+  # other dependencies
+  which,
+  bash,
+  glibcLocales,
+  # causes Python packaging conflict with any package requiring rdflib,
+  # so use the unpatched rdflib by default (disables Nipype provenance tracking);
+  # see https://github.com/nipy/nipype/issues/2888:
+  useNeurdflib ? false,
+}:
+
+buildPythonPackage rec {
+  pname = "nipype";
+  version = "1.10.0";
+  format = "setuptools";
+
+  src = fetchPypi {
+    inherit pname version;
+    hash = "sha256-GeXWzvpwmXGY94vGZe9NPTy1MyW1uYpy5Rrvra9rPg4=";
+  };
+
+  postPatch = ''
+    substituteInPlace nipype/interfaces/base/tests/test_core.py \
+      --replace-fail "/usr/bin/env bash" "${bash}/bin/bash"
+  '';
+
+  pythonRelaxDeps = [ "traits" ];
+
+  dependencies = [
+    click
+    python-dateutil
+    etelemetry
+    filelock
+    looseversion
+    networkx
+    nibabel
+    numpy
+    packaging
+    prov
+    psutil
+    puremagic
+    pydot
+    rdflib
+    scipy
+    simplejson
+    traits
+    xvfbwrapper
+  ];
+
+  nativeCheckInputs = [
+    pybids
+    glibcLocales
+    mock
+    pytest
+    pytest-forked
+    pytest-xdist
+    which
+  ];
+
+  # checks on darwin inspect memory which doesn't work in build environment
+  doCheck = !stdenv.hostPlatform.isDarwin;
+  # ignore tests which incorrect fail to detect xvfb
+  checkPhase = ''
+    pytest nipype/tests -k 'not display and not test_no_et_multiproc'
+  '';
+  pythonImportsCheck = [ "nipype" ];
+
+  meta = {
+    homepage = "https://nipy.org/nipype";
+    description = "Neuroimaging in Python: Pipelines and Interfaces";
+    changelog = "https://github.com/nipy/nipype/releases/tag/${version}";
+    mainProgram = "nipypecli";
+    license = lib.licenses.bsd3;
+    maintainers = with lib.maintainers; [ ashgillman ];
+  };
+}