{ lib, stdenv, bzip2, cmake, fetchFromGitHub, ncurses, python3, readline, }: stdenv.mkDerivation (finalAttrs: { pname = "spades"; version = "4.2.0"; src = fetchFromGitHub { owner = "ablab"; repo = "spades"; tag = "v${finalAttrs.version}"; hash = "sha256-BlZjfZKtCm1kWNPjdth3pYFN0plU7xfTsFotPefzzMY="; }; sourceRoot = "${finalAttrs.src.name}/src"; cmakeFlags = [ "-DZLIB_ENABLE_TESTS=OFF" "-DSPADES_BUILD_INTERNAL=OFF" ]; preConfigure = '' # The CMakeListsInternal.txt file should be empty in the release tarball echo "" > CMakeListsInternal.txt ''; nativeBuildInputs = [ cmake ]; buildInputs = [ bzip2 ncurses python3 readline ]; doCheck = true; strictDeps = true; meta = { description = "St. Petersburg genome assembler, a toolkit for assembling and analyzing sequencing data"; changelog = "https://github.com/ablab/spades/blob/${finalAttrs.version}/changelog.md"; downloadPage = "https://github.com/ablab/spades"; homepage = "http://ablab.github.io/spades"; license = lib.licenses.gpl2Only; platforms = lib.platforms.unix; maintainers = with lib.maintainers; [ bzizou ]; broken = stdenv.hostPlatform.isMusl; }; })