646b892680
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82 lines
2.0 KiB
Nix
82 lines
2.0 KiB
Nix
{
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lib,
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stdenv,
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fetchurl,
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python3,
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perl,
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blast,
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autoPatchelfHook,
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zlib,
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bzip2,
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glib,
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libxml2,
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coreutils,
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sqlite,
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}:
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let
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pname = "blast-bin";
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version = "2.16.0";
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srcs = {
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x86_64-linux = fetchurl {
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url = "https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${version}/ncbi-blast-${version}+-x64-linux.tar.gz";
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hash = "sha256-sLEwmMkB0jsyStFwDnRxu3QIp/f1F9dNX6rXEb526PQ=";
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};
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aarch64-linux = fetchurl {
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url = "https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${version}/ncbi-blast-${version}+-aarch64-linux.tar.gz";
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hash = "sha256-1EeiMu08R9Glq8qRky4OTT5lQPLJcM7iaqUrmUOS4MI=";
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};
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x86_64-darwin = fetchurl {
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url = "https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${version}/ncbi-blast-${version}+-x64-macosx.tar.gz";
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hash = "sha256-fu4edyD12q8G452ckrEl2Qct5+uB9JnABd7bCLkyMkw=";
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};
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aarch64-darwin = fetchurl {
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url = "https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${version}/ncbi-blast-${version}+-aarch64-macosx.tar.gz";
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hash = "sha256-6NpPNLBCHaBRscLZ5fjh5Dv3bjjPk2Gh2+L7xEtiJNs=";
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};
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};
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src = srcs.${stdenv.hostPlatform.system};
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in
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stdenv.mkDerivation {
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inherit pname version src;
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nativeBuildInputs = lib.optionals stdenv.hostPlatform.isLinux [ autoPatchelfHook ];
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buildInputs = [
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python3
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perl
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]
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++ lib.optionals stdenv.hostPlatform.isLinux [
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zlib
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bzip2
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glib
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libxml2
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sqlite
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];
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installPhase = ''
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runHook preInstall
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install -Dm755 bin/* -t $out/bin
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runHook postInstall
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'';
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preFixup = ''
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substituteInPlace $out/bin/get_species_taxids.sh \
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--replace /bin/rm ${coreutils}/bin/rm
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'';
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meta = with lib; {
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inherit (blast.meta) description homepage license;
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platforms = [
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"x86_64-linux"
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"aarch64-linux"
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"x86_64-darwin"
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"aarch64-darwin"
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];
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sourceProvenance = with sourceTypes; [ binaryNativeCode ];
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maintainers = with maintainers; [ natsukium ];
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};
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}
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