646b892680
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79 lines
1.7 KiB
Nix
79 lines
1.7 KiB
Nix
{
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lib,
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stdenv,
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fetchurl,
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fetchpatch,
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zlib,
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bzip2,
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xz,
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curl,
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perl,
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}:
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stdenv.mkDerivation rec {
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pname = "htslib";
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version = "1.22";
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src = fetchurl {
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url = "https://github.com/samtools/htslib/releases/download/${version}/${pname}-${version}.tar.bz2";
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hash = "sha256-YlDB3yl9tHdRbmCsjfRe11plLR8lsPN/EvWxcmnq/ek=";
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};
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patches = [
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(fetchpatch {
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url = "https://github.com/samtools/htslib/commit/31006e1c8edd02eb6321ed9be76b84fca5d20cb6.patch";
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hash = "sha256-sbnkVmXIbs/Cn/msUUrJpJZCI2DHX5kpGSka2cccZIQ=";
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})
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];
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# perl is only used during the check phase.
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nativeBuildInputs = [ perl ];
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buildInputs = [
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zlib
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bzip2
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xz
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curl
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];
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configureFlags =
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if !stdenv.hostPlatform.isStatic then
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[ "--enable-libcurl" ] # optional but strongly recommended
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else
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[
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"--disable-libcurl"
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"--disable-plugins"
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];
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# In the case of static builds, we need to replace the build and install phases
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buildPhase = lib.optional stdenv.hostPlatform.isStatic ''
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make AR=$AR lib-static
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make LDFLAGS=-static bgzip htsfile tabix
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'';
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installPhase = lib.optional stdenv.hostPlatform.isStatic ''
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install -d $out/bin
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install -d $out/lib
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install -d $out/include/htslib
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install -D libhts.a $out/lib
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install -m644 htslib/*h $out/include/htslib
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install -D bgzip htsfile tabix $out/bin
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'';
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preCheck = ''
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patchShebangs test/
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'';
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enableParallelBuilding = true;
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doCheck = true;
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meta = with lib; {
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description = "C library for reading/writing high-throughput sequencing data";
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license = licenses.mit;
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homepage = "http://www.htslib.org/";
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platforms = platforms.unix;
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maintainers = [ maintainers.mimame ];
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};
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}
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