646b892680
Some checks failed
Periodic Merges (6h) / master → staging-nixos (push) Failing after 12m50s
Periodic Merges (6h) / master → staging-next (push) Failing after 12m54s
Periodic Merges (24h) / merge-base(master,staging) → haskell-updates (push) Failing after 11m54s
Periodic Merges (6h) / staging-next → staging (push) Failing after 12m13s
Periodic Merges (24h) / staging-next-25.05 → staging-25.05 (push) Failing after 13m24s
Periodic Merges (24h) / release-25.05 → staging-next-25.05 (push) Failing after 14m28s
48 lines
1.1 KiB
Nix
48 lines
1.1 KiB
Nix
{
|
|
stdenv,
|
|
lib,
|
|
fetchurl,
|
|
python3Packages,
|
|
cmake,
|
|
python3,
|
|
}:
|
|
|
|
python3Packages.buildPythonApplication rec {
|
|
pname = "obitools3";
|
|
version = "3.0.1b11";
|
|
format = "setuptools";
|
|
|
|
src = fetchurl {
|
|
url = "https://git.metabarcoding.org/obitools/${pname}/repository/v${version}/archive.tar.gz";
|
|
sha256 = "1x7a0nrr9agg1pfgq8i1j8r1p6c0jpyxsv196ylix1dd2iivmas1";
|
|
};
|
|
|
|
nativeBuildInputs = [
|
|
python3Packages.cython
|
|
cmake
|
|
];
|
|
|
|
postPatch = lib.optionalString stdenv.hostPlatform.isAarch64 ''
|
|
substituteInPlace setup.py \
|
|
--replace "'-msse2'," ""
|
|
'';
|
|
|
|
preBuild = ''
|
|
substituteInPlace src/CMakeLists.txt --replace \$'{PYTHONLIB}' "$out/${python3.sitePackages}";
|
|
export NIX_CFLAGS_COMPILE="-L $out/${python3.sitePackages} $NIX_CFLAGS_COMPILE"
|
|
'';
|
|
|
|
dontConfigure = true;
|
|
|
|
doCheck = true;
|
|
|
|
meta = with lib; {
|
|
description = "Management of analyses and data in DNA metabarcoding";
|
|
mainProgram = "obi";
|
|
homepage = "https://git.metabarcoding.org/obitools/obitools3";
|
|
license = licenses.cecill20;
|
|
maintainers = [ maintainers.bzizou ];
|
|
platforms = platforms.all;
|
|
};
|
|
}
|