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66 lines
1.4 KiB
Nix
66 lines
1.4 KiB
Nix
{
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lib,
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fetchFromGitHub,
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raxml,
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mafft,
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trimal,
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blast,
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diamond,
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python3Packages,
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}:
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let
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finalAttrs = {
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pname = "phylophlan";
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version = "3.1.1";
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pyproject = true;
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src = fetchFromGitHub {
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owner = "biobakery";
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repo = "phylophlan";
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rev = "refs/tags/${finalAttrs.version}";
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hash = "sha256-KlWKt2tH2lQBh/eQ2Hbcu2gXHEFfmFEc6LrybluxINc=";
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};
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build-system = with python3Packages; [ setuptools ];
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# It has no tests
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doCheck = false;
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dependencies = with python3Packages; [
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biopython
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dendropy
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matplotlib
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numpy
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pandas
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seaborn
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distutils
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requests
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];
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# Minimum needed external tools
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# See https://github.com/biobakery/phylophlan/wiki#dependencies
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propagatedBuildInputs = [
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raxml
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mafft
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trimal
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blast
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diamond
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];
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postInstall = ''
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# Not revelant in this context
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rm -f $out/bin/phylophlan_write_default_configs.sh
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'';
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meta = {
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homepage = "https://github.com/biobakery/phylophlan";
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description = "Precise phylogenetic analysis of microbial isolates and genomes from metagenomes";
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changelog = "https://github.com/biobakery/phylophlan/releases";
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license = lib.licenses.mit;
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maintainers = with lib.maintainers; [ theobori ];
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mainProgram = "phylophlan";
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};
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};
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in
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python3Packages.buildPythonApplication finalAttrs
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