646b892680
Some checks failed
Periodic Merges (6h) / master → staging-nixos (push) Failing after 12m50s
Periodic Merges (6h) / master → staging-next (push) Failing after 12m54s
Periodic Merges (24h) / merge-base(master,staging) → haskell-updates (push) Failing after 11m54s
Periodic Merges (6h) / staging-next → staging (push) Failing after 12m13s
Periodic Merges (24h) / staging-next-25.05 → staging-25.05 (push) Failing after 13m24s
Periodic Merges (24h) / release-25.05 → staging-next-25.05 (push) Failing after 14m28s
56 lines
976 B
Nix
56 lines
976 B
Nix
{
|
|
lib,
|
|
stdenv,
|
|
fetchFromGitHub,
|
|
python3,
|
|
which,
|
|
ldc,
|
|
zlib,
|
|
lz4,
|
|
}:
|
|
|
|
stdenv.mkDerivation rec {
|
|
pname = "sambamba";
|
|
version = "1.0.1";
|
|
|
|
src = fetchFromGitHub {
|
|
owner = "biod";
|
|
repo = "sambamba";
|
|
tag = "v${version}";
|
|
hash = "sha256-3O9bHGpMuCgdR2Wm7Dv1VUjMT1QTn8K1hdwgjvwhFDw=";
|
|
fetchSubmodules = true;
|
|
};
|
|
|
|
nativeBuildInputs = [
|
|
which
|
|
python3
|
|
ldc
|
|
];
|
|
buildInputs = [
|
|
zlib
|
|
lz4
|
|
];
|
|
|
|
buildFlags = [
|
|
"CC=${stdenv.cc.targetPrefix}cc"
|
|
];
|
|
|
|
# Upstream's install target is broken; copy manually
|
|
installPhase = ''
|
|
runHook preInstall
|
|
|
|
install -Dm755 bin/sambamba-${version} $out/bin/sambamba
|
|
|
|
runHook postInstall
|
|
'';
|
|
|
|
meta = with lib; {
|
|
description = "SAM/BAM processing tool";
|
|
mainProgram = "sambamba";
|
|
homepage = "https://lomereiter.github.io/sambamba/";
|
|
maintainers = with maintainers; [ jbedo ];
|
|
license = with licenses; gpl2;
|
|
platforms = platforms.x86_64;
|
|
};
|
|
}
|