646b892680
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53 lines
1021 B
Nix
53 lines
1021 B
Nix
{
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bwa,
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lib,
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fermi2,
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ropebwt2,
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fetchFromGitHub,
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python3Packages,
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}:
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python3Packages.buildPythonApplication rec {
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name = "tiddit";
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version = "3.6.1";
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pyproject = true;
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src = fetchFromGitHub {
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owner = "SciLifeLab";
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repo = "TIDDIT";
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tag = "TIDDIT-${version}";
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hash = "sha256-OeqVQJDw0fmSDWIGab2qtTJCzZxqLY2XzRqaTRuPIdI=";
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};
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build-system = with python3Packages; [
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setuptools
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wheel
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];
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dependencies = with python3Packages; [
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cython
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joblib
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numpy
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pysam
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];
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makeWrapperArgs = [
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"--prefix PATH : ${
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lib.makeBinPath [
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bwa
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fermi2
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ropebwt2
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]
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}"
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"--set PYTHONPATH $PYTHONPATH"
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];
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meta = {
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homepage = "https://github.com/SciLifeLab/TIDDIT";
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description = "Identify chromosomal rearrangements using Mate Pair or Paired End sequencing data";
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mainProgram = "tiddit";
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license = lib.licenses.gpl3Only;
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maintainers = with lib.maintainers; [ apraga ];
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platforms = lib.platforms.unix;
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};
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}
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