646b892680
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53 lines
1.2 KiB
Nix
53 lines
1.2 KiB
Nix
{
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lib,
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stdenv,
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fetchFromGitHub,
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fetchpatch,
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}:
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stdenv.mkDerivation rec {
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pname = "whisper";
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version = "2.0.1";
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src = fetchFromGitHub {
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owner = "refresh-bio";
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repo = "whisper";
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rev = "v${version}";
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sha256 = "0wpx1w1mar2d6zq2v14vy6nn896ds1n3zshxhhrrj5d528504iyw";
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};
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patches = [
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# gcc-13 compatibility fixes:
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# https://github.com/refresh-bio/Whisper/pull/17
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(fetchpatch {
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name = "gcc-13.patch";
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url = "https://github.com/refresh-bio/Whisper/commit/d67e110dd6899782e4687188f6b432494315b0b4.patch";
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hash = "sha256-Z8GrkUMIKO/ccEdwulQh+WUox3CEckr6NgoBSzYvfuw=";
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})
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];
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preConfigure = ''
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cd src
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# disable default static linking
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sed -i 's/ -static / /' makefile
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'';
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enableParallelBuilding = true;
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installPhase = ''
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runHook preInstall
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install -Dt $out/bin whisper whisper-index
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runHook postInstall
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'';
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meta = with lib; {
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broken = stdenv.hostPlatform.isDarwin;
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description = "Short read sequence mapper";
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license = licenses.gpl3;
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homepage = "https://github.com/refresh-bio/whisper";
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maintainers = with maintainers; [ jbedo ];
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platforms = platforms.x86_64;
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};
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}
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