646b892680
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75 lines
1.8 KiB
Nix
75 lines
1.8 KiB
Nix
{
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lib,
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stdenv,
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fetchFromGitHub,
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boost,
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gtest,
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zlib,
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}:
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stdenv.mkDerivation (finalAttrs: {
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pname = "dragmap";
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version = "1.3.0";
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src = fetchFromGitHub {
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owner = "Illumina";
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repo = "DRAGMAP";
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tag = finalAttrs.version;
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fetchSubmodules = true;
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hash = "sha256-f1jsOErriS1I/iUS4CzJ3+Dz8SMUve/ccb3KaE+L7U8=";
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};
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nativebuildInputs = [ boost ];
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buildInputs = [
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gtest
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zlib
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];
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patches = [
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# pclose is called on a NULL value. This is no longer allowed since
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# https://github.com/bminor/glibc/commit/64b1a44183a3094672ed304532bedb9acc707554
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./stdio-pclose.patch
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# Add missing include cstdint. Upstream does not accept PR. Issue opened at
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# https://github.com/Illumina/DRAGMAP/issues/63
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./cstdint.patch
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# Missing import in Mapper.cpp
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# Issue opened upstream https://github.com/Illumina/DRAGMAP/pull/66
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./boost-iterator-range.patch
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];
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env = {
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GTEST_INCLUDEDIR = "${gtest.dev}/include";
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CPPFLAGS = "-I ${boost.dev}/include";
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LDFLAGS = "-L ${boost.out}/lib";
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};
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installPhase = ''
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runHook preInstall
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mkdir -p $out/bin
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cp build/release/dragen-os $out/bin/
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runHook postInstall
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'';
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# Tests are launched by default from makefile
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doCheck = false;
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meta = {
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description = "Open Source version of Dragen mapper for genomics";
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mainProgram = "dragen-os";
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longDescription = ''
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DRAGMAP is an open-source software implementation of the DRAGEN mapper,
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which the Illumina team created to procude the same results as their
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proprietary DRAGEN hardware.
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'';
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homepage = "https://github.com/Illumina/DRAGMAP";
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changelog = "https://github.com/Illumina/DRAGMAP/releases/tag/${finalAttrs.version}";
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license = lib.licenses.gpl3;
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platforms = [ "x86_64-linux" ];
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maintainers = with lib.maintainers; [ apraga ];
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};
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})
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