646b892680
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58 lines
1.4 KiB
Nix
58 lines
1.4 KiB
Nix
{
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lib,
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buildPerlPackage,
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fetchFromGitHub,
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}:
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buildPerlPackage rec {
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pname = "BioExtAlign";
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version = "1.5.1";
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outputs = [ "out" ];
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src = fetchFromGitHub {
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owner = "bioperl";
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repo = "bioperl-ext";
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rev = "bioperl-ext-release-${lib.replaceStrings [ "." ] [ "-" ] version}";
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sha256 = "sha256-+0tZ6q3PFem8DWa2vq+njOLmjDvMB0JhD0FGk00lVMA=";
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};
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patches = [
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# Starting for Perl 5.6, implicit function declaration are treated as errors
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# There may be an error but ensembl-vep (the main package for this dependency)
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# runs
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./no-implicit-function.patch
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# Tests need other parts of BioExt, disabling them
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./disable-other-tests.patch
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./fprintf.patch
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];
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# Do not install other Bio-ext packages
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preConfigure = ''
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cd Bio/Ext/Align
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'';
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# Disable tests as it requires Bio::Tools::Align which is in a different directory
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buildPhase = ''
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make
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'';
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checkPhase = ''
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runHook preCheck
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make test
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runHook postCheck
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'';
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meta = {
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homepage = "https://github.com/bioperl/bioperl-ext";
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description = "Write Perl Subroutines in Other Programming Languages";
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longDescription = ''
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Part of BioPerl Extensions (BioPerl-Ext) distribution, a collection of Bioperl C-compiled extensions.
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'';
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license = with lib.licenses; [ artistic1 ];
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maintainers = with lib.maintainers; [ apraga ];
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};
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}
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